A few ideas.
1) Try setting the cpu affinity to 1. Open the game and in the menu press Ctrl + Shift + Esc to bring up task manager. Find swkotor.exe under processes, right click, set affinity and uncheck all but one processor.
2) In swkotor.ini go down to [Graphics Options] and add the following line: Disable Vertex Buffer Objects = 1
3) Try running windowed. Again in swkotor.ini, go down to [Graphics Options] and find the line FullScreen=1. Change this to read FullScreen=0 and try again.
EDIT: Are you having this issue with any other modules?
EDIT 2: Also try warping directly to the Ebon Hawk (warp ebo_m12aa) Again not a fix but it might work
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Last edited by Vindikorr; 04-11-2013 at 02:05 PM.